Package: PopVar 1.3.2
Jeffrey Neyhart
PopVar: Genomic Breeding Tools: Genetic Variance Prediction and Cross-Validation
The main attribute of 'PopVar' is the prediction of genetic variance in bi-parental populations, from which the package derives its name. 'PopVar' contains a set of functions that use phenotypic and genotypic data from a set of candidate parents to 1) predict the mean, genetic variance, and superior progeny value of all, or a defined set of pairwise bi-parental crosses, and 2) perform cross-validation to estimate genome-wide prediction accuracy of multiple statistical models. More details are available in Mohammadi, Tiede, and Smith (2015, <doi:10.2135/cropsci2015.01.0030>). A dataset 'think_barley.rda' is included for reference and examples.
Authors:
PopVar_1.3.2.tar.gz
PopVar_1.3.2.zip(r-4.6)PopVar_1.3.2.zip(r-4.5)
PopVar_1.3.2.tgz(r-4.6-any)PopVar_1.3.2.tgz(r-4.5-any)
PopVar_1.3.2.tar.gz(r-4.6-any)
PopVar_1.3.2.tgz(r-4.5-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
PopVar/json (API)
NEWS
| # Install 'PopVar' in R: |
| install.packages('PopVar', repos = c('https://umn-barleyoatsilphium.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/umn-barleyoatsilphium/popvar/issues
Last updated from:ef9011bfd9. Checks:8 ERROR, 1 OK. Indexed: yes.
The latest version of this package failed to build. Look at thebuild logs for more information.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | ERROR | 135 | ||
| source / vignettes | ERROR | 187 | ||
| linux-release-x86_64 | ERROR | 121 | ||
| macos-devel-arm64 | ERROR | 115 | ||
| macos-release-arm64 | ERROR | 153 | ||
| windows-devel | ERROR | 85 | ||
| windows-release | ERROR | 77 | ||
| windows-oldrel | ERROR | 77 | ||
| wasm-release | OK | 102 |
Exports:cross_validateinterpolate_genetic_positionmppop_predict2mppop.predictpop_predict2pop.predictpop.predict2predict_marker_effectspredict_meritread_PopVarx.val
